$GLBFRG group (relevant to RUNTYP=GLOBOP)
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This group defines the sets of ab initio atoms in $DATA
that are treated as groups in Monte Carlo runs. It also
defines any groups that are to be frozen, not moved during
the Monte Carlo search.
AIFRG = an array assigning atoms to groups. Two styles
are supported (the choice is made based on
AIFRG(1): if it is nonzero, choice (a) is taken,
otherwise AIFRG(1) is ignored and choice (b) is
taken):
a) AIFRG(i)=m assigns atom i is to fragment m.
AIFRG(i) must be given for each atom.
b) the style is
a1 a2 ... ak 0
b1 b2 ... bm 0
...
Elements a1...ak are assigned to fragment 1,
then b1...bm are assigned to fragment 2,etc.
An element is one of the following:
I or I -J
where I means atom I, and a pair I,-J means
the range of atoms I-J. There must be no space
after the "-"!
Example:
AIFRG(1)=1,1,1,2,2,1 is equivalent to
AIFRG(1)=0, 1,-3,6,0, 4,5,0
Both assign atoms 1,2,3 and 6 to fragment 1,
and 4,5 to fragment 2.
NAICUT = automatically divides a molecule into fragments by
assigning NAICUT atoms to each fragment (useful
for something like water clusters). This sets
AIFRG, so it need not be included. If 0, the
automatic option is disabled. (default: 0)
IFXFMO = array of FMO fragments or ab initio groups that
are not moved during the Monte Carlo search.
if an optimization step (MCMIN or OPTN) is used,
the fragment/group will likely be moved.
IBNDS = Array of atoms to be positionally linked.
example for two pairs between atoms 1 and 5,
and 3 and 6.
IBNDS(1)=1,5,3,6
PRSEP = Maximum separation allowed for paired atoms.
The default uses a formula using the average
atomic radii of each element from Macmolplt, which
are designed to approximate single bonds.
PRSEP= (radius_atom1 + radius_atom2)*1.05
To specify a different max separation, you MUST
specify a value for each pair of bonded atoms
given in IBNDS in the same order. To use the
default for a given pair, enter 0.
Example: for 3 pairs with a non-default maximum
separation for the second pair given in IBNDS use
PRSEP(1)=0,X,0 where X is the desired separation
INDEP = Integer flag that toggles whether translations
of fragments connected by paired atoms are
propagated to all other connected fragments.
A value of 1 disables propagation. (Default=0)
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Edited by Shiro KOSEKI on Fri Nov 5 14:55:12 2021.